You may have to click on the picture to enlarge it, but you can see two completely bare wires in the harness. There is more damage farther down too. This is what happens when the cable doesn't get put back in the stock routing brackets. The rotor tore up the insulation. I'm hoping it will still be charging when it's all back together. The shorting may have fryed something else in the system, but won't know until we can run it and make tests. New stator still looks fine, but the bike was only ridden about 40 miles since it was installed.